BIOL 708L/ NACS 728B
Quantitative Analysis of Biological Data

Fall 2007
Updated 9/04/2007

Course Information

Lecture Tu & Th 12:00 - 1:15, CHE 2118
Lab M 3:30 - 5:00, PLS 1129.
Description & Prerequisites http://www.glue.umd.edu/~jzsimon/biol708L/description
Required Text Edward Batschelet, Introduction to Mathematics for Life Scientists, Springer-Verlag, 1979, ISBN 978-3-540-09648-1.
Recommended  Richard G. Lyons Understanding Digital Signal Processing, Prentice Hall PTR , 2004, ISBN 9780131089891.
Web Site http://www.glue.umd.edu/~jzsimon/biol708L/
Testudo Info BIOL 708L/NACS 728B

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Instructor Info

Jonathan Z. Simon, Professor
ECE Office AVW 2209
ECE Phone 301-405-3645
Bio Office BPS 3227
Bio Phone 301-405-6812
Email jzsimon@umd.edu
WWW http://www.isr.umd.edu/Labs/CSSL/

Office Hours

  Day Time Location
  Wed 3:00 - 5:00 BPS 3227

Outline

Introduction & Mathematical Review
Basic Matlab
Smoothing & Detrending: Data Filtering
Frequency & Fourier Transforms
Estimating Validity: Error Bars using Bootstrap
Improving Signal to Noise Ratio
Basic Modeling
Cross-correlation & Auto-correlation
Spectrograms & Time-Frequency Analysis
Statistics for Circular or Periodic Data
Hands-on Data Analysis (BYOD)

Using MATLAB around UMCP

There are many computers around campus with Matlab installed. The campus OIT web system can tell you which open labs have Matlab here. (For the purposes of this course, it should not matter which version of Matlab is installed.) In the past, some of the better equipped labs have been Parking Garage II Rm 0504 (lab 37), Computer and Space Sciences Building Rm 3330 (lab 32), Computer and Space Sciences Building Rm 3332 (lab 33), Martin Hall (Engineering) Rm 0309 (lab 23), and 0312 (lab 25) .

Using MATLAB in your lab and at home

Ideally, you should convince your research advisor to install Matlab on at least one computer in your lab.  :) 

Additionally, if you want to buy the (fully functional) student version of Matlab, it is $99 at most academic bookstores (though for some reason it's $109 in the campus bookstore), and as of 2007, this price includes several of the most useful toolboxes, including the Signal Processing toolbox. These prices are very inexpensive compared to the full-priced version.

But, convincing your advisor to get it for your lab is really the best way to get full-time access.

Other Interesting Sites

Johns Hopkins University Signals Systems Controls: Demonstrations: http://www.jhu.edu/~signals/
Matlab Help Desk
 

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