Available Software

A large number of software packages are available on the cluster, and for some of them, multiple versions of the same package. Software packages that are available on the cluster include:

Package Name Versions Tap Module
load		 Notes Description Categories Comments
Aria       Aria Built against CNS 1.21, GNU compilers
Bio-BWA       Burrows-Wheeler Aligner Biology,
Genomics
Boost       Boost C++ libraries Programming,
Library
Bowtie       Bowtie ultrafast short read DNA aligner Biology,
Genomics
BLAST       BLAST: Basic Local Alignment Search Tool Biology,
Genomics
     
     
Matlab       Matlab Numerical computing environment Numerical methods,
Math		 Many modules available
     
     
     
     
     
Perl       Perl scripting language Programming Many modules available
     
     
VASP       Vienna Ab-initio Simulation Package Chemistry HPCC only; requires licensing